# This file was produced by samtools stats (1.10+htslib-1.10) and can be plotted using plot-bamstats
# This file contains statistics for all reads.
# The command line was:  stats OC_201029_mouse_maelKO_testis_eccDNA.fastq.bam.sort
# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
CHK	5149d766	256a463d	cf90e68b
# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
SN	raw total sequences:	159952
SN	filtered sequences:	0
SN	sequences:	159952
SN	is sorted:	1
SN	1st fragments:	159952
SN	last fragments:	0
SN	reads mapped:	158564
SN	reads mapped and paired:	0	# paired-end technology bit set + both mates mapped
SN	reads unmapped:	1388
SN	reads properly paired:	0	# proper-pair bit set
SN	reads paired:	0	# paired-end technology bit set
SN	reads duplicated:	0	# PCR or optical duplicate bit set
SN	reads MQ0:	2189	# mapped and MQ=0
SN	reads QC failed:	0
SN	non-primary alignments:	33370
SN	total length:	1664701720	# ignores clipping
SN	total first fragment length:	1664701720	# ignores clipping