# grouping for fibers 
track DM-FIRE-fibers
compositeTrack on
shortLabel DM-FIRE-fibers
longLabel DM-FIRE-fibers
type bigBed 12 +
maxItems 100000
visibility dense
priority 80
html http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/fire-description.html

# grouping for peaks
track DM-FIRE-peaks
compositeTrack on
shortLabel DM-FIRE-peaks
longLabel DM-FIRE-peaks
type bigBed 12 +
maxItems 100000
visibility dense
priority 30
html http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/fire-description.html

    # track of unreliable regions just above the peak tracks
    track DM-unreliable-FIRE-coverage-regions
    parent DM-FIRE-peaks
    shortLabel DM-unreliable-FIRE-coverage-regions
    longLabel DM-unreliable-FIRE-coverage-regions
    type bigBed
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bb/unreliable-coverage-regions.bb
    visibility dense
    priority 29

# grouping for coverage
track DM-FIRE-coverage
superTrack on show
shortLabel DM-FIRE-coverage
longLabel DM-FIRE-coverage
priority 90
html http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/fire-description.html

track DM-all-FIRE-coverage
parent DM-FIRE-coverage
longLabel DM-all-FIRE-coverage
shortLabel DM-all-FIRE-coverage
container multiWig
aggregate stacked
showSubtrackColorOnUi on
type bigWig 0 1000
autoScale off
alwaysZero on
viewLimits 0:46
visibility full
maxHeightPixels 100:50:8
html http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/fire-description.html
priority 90
    
    track DM-all-FIRE-accessible
    parent DM-all-FIRE-coverage
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bw/all.fire.coverage.bw
    type bigWig
    color 139,0,0
    
    track DM-all-FIRE-linker
    parent DM-all-FIRE-coverage
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bw/all.linker.coverage.bw
    type bigWig
    color 147,112,219
    
    track DM-all-FIRE-nucleosome
    parent DM-all-FIRE-coverage
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bw/all.nucleosome.coverage.bw
    type bigWig
    color 169,169,169
    
    track DM-narrow-FIRE-peaks
    parent DM-FIRE-peaks
    type bigNarrowPeak
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bb/fire-peaks.bb
    shortLabel DM-FIRE-peaks
    longLabel DM-FIRE-peaks
    visibility dense
    maxHeightPixels 50:50:1

    track DM-FIRE-hap-differences
    parent DM-FIRE-peaks
    type bigBed 9 +
    itemRgb on
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bb/hap_differences.bb
    shortLabel DM-FIRE-hap-differences
    longLabel DM-FIRE-hap-differences
    visibility dense
    maxHeightPixels 25:25:1

    track DM-wide-FIRE-peaks
    parent DM-FIRE-peaks
    shortLabel DM-wide-FIRE-peaks
    longLabel DM-wide-FIRE-peaks
    type bigBed 
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bb/fire-wide-peaks.bb
    visibility dense
    maxItems 100000
    priority 30

track DM-FIRE-percent-accessible
shortLabel DM-FIRE-percent-accessible
longLabel  DM-FIRE-percent-accessible
graphTypeDefault points
aggregate transparentOverlay
container multiWig
aggregate none 
showSubtrackColorOnUi on
type bigWig 0 1000
alwaysZero on
viewLimits 0:100
autoScale off
maxItems 100000
visibility full
maxHeightPixels 100:50:8
priority 1
yLineOnOff on
yLineMark 100
html http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/fire-description.html
gridDefault on

    track DM-all-FIRE-percent-accessible
    parent DM-FIRE-percent-accessible
    shortLabel DM-all-FIRE-percent-accessible
    longLabel  DM-all-FIRE-percent-accessible
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bw/all.percent.accessible.bw
    type bigWig
    visibility hide
    color 0,0,0

    track DM-H1-FIRE-fibers
    parent DM-FIRE-fibers
    shortLabel DM-H1-FIRE-fibers
    longLabel DM-H1-FIRE-fibers
    visibility dense
    type bigBed 12 +
    itemRgb On
    filterText.keywords H1
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bb/fire-fibers.bb 
    decorator.default.bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bb/fire-fiber-decorators.bb 
    decorator.default.filterValues.keywords 5mC,m6A,NUC,LINKER,FIRE
    decorator.default.filterValuesDefault.keywords LINKER,FIRE

    track DM-H2-FIRE-fibers
    parent DM-FIRE-fibers
    shortLabel DM-H2-FIRE-fibers
    longLabel DM-H2-FIRE-fibers
    visibility dense
    type bigBed 12 +
    itemRgb On
    filterText.keywords H2
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bb/fire-fibers.bb 
    decorator.default.bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bb/fire-fiber-decorators.bb 
    decorator.default.filterValues.keywords 5mC,m6A,NUC,LINKER,FIRE
    decorator.default.filterValuesDefault.keywords LINKER,FIRE

    track DM-UNK-FIRE-fibers
    parent DM-FIRE-fibers
    shortLabel DM-UNK-FIRE-fibers
    longLabel DM-UNK-FIRE-fibers
    visibility dense
    type bigBed 12 +
    itemRgb On
    filterText.keywords UNK
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bb/fire-fibers.bb 
    decorator.default.bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bb/fire-fiber-decorators.bb 
    decorator.default.filterValues.keywords 5mC,m6A,NUC,LINKER,FIRE
    decorator.default.filterValuesDefault.keywords LINKER,FIRE

    track DM-hap1-FIRE-percent-accessible
    parent DM-FIRE-percent-accessible
    shortLabel DM-hap1-FIRE-percent-accessible
    longLabel  DM-hap1-FIRE-percent-accessible
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bw/hap1.percent.accessible.bw
    type bigWig
    visibility full
    color 0,0,255

    track DM-hap2-FIRE-percent-accessible
    parent DM-FIRE-percent-accessible
    shortLabel DM-hap2-FIRE-percent-accessible
    longLabel  DM-hap2-FIRE-percent-accessible
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bw/hap2.percent.accessible.bw
    type bigWig
    visibility full
    color 255,0,0

track DM-FIRE-FDR
compositeTrack on
shortLabel DM-FIRE-FDR
longLabel DM-FIRE-FDR
type bigWig 0 1000
maxItems 100000
maxHeightPixels 100:50:1
alwaysZero on
priority 10
html http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/fire-description.html

    track DM-log-FIRE-FDR
    parent DM-FIRE-FDR
    bigDataUrl http://trackhub.genome.duke.edu/zhanglab/Lindsay/HCT116_ecMDM2/trackHub-v0.1.2/bw/log_FDR.bw
    shortLabel DM -10log10 FDR
    longLabel DM -10log10 FDR
    autoScale on
    visibility hide
    yLineOnOff on
    yLineMark 13.010299956639813
    gridDefault on