[M::mm_idx_gen::110.710*1.79] collected minimizers
[M::mm_idx_gen::151.932*1.84] sorted minimizers
[M::main::151.933*1.84] loaded/built the index for 1907 target sequence(s)
[M::mm_mapopt_update::154.309*1.83] mid_occ = 693
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1907
[M::mm_idx_stat::155.574*1.82] distinct minimizers: 98661496 (36.82% are singletons); average occurrences: 6.101; average spacing: 5.304; total length: 3192581492
[M::worker_pipeline::1532.774*1.97] mapped 41385 sequences
[M::worker_pipeline::2946.711*1.98] mapped 38815 sequences
[M::worker_pipeline::4305.822*1.98] mapped 41394 sequences
[M::worker_pipeline::5719.866*1.98] mapped 38608 sequences
[M::worker_pipeline::5880.211*1.98] mapped 5482 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/Kara_Stark/Kara_data/20230523_Koala_KoRV_liver_testis_eccDNA/fastq_pass/phaCin.fa /data/zhanglab/Kara_Stark/Kara_data/20230523_Koala_KoRV_liver_testis_eccDNA/fastq_pass/barcode07.fastq
[M::main] Real time: 5880.661 sec; CPU: 11650.683 sec; Peak RSS: 23.609 GB
[bam_sort_core] merging from 17 files...
bamFilesList: ['barcode07.fastqphaCin.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::110.825*1.80] collected minimizers
[M::mm_idx_gen::152.035*1.85] sorted minimizers
[M::main::152.036*1.85] loaded/built the index for 1907 target sequence(s)
[M::mm_mapopt_update::154.428*1.83] mid_occ = 693
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1907
[M::mm_idx_stat::155.656*1.83] distinct minimizers: 98661496 (36.82% are singletons); average occurrences: 6.101; average spacing: 5.304; total length: 3192581492
[M::worker_pipeline::3257.753*1.98] mapped 52203 sequences
[M::worker_pipeline::6319.762*1.98] mapped 48273 sequences
[M::worker_pipeline::9343.933*1.98] mapped 50492 sequences
[M::worker_pipeline::12439.788*1.98] mapped 50926 sequences
[M::worker_pipeline::14451.479*1.98] mapped 28100 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/Kara_Stark/Kara_data/20230523_Koala_KoRV_liver_testis_eccDNA/fastq_pass/phaCin.fa /data/zhanglab/Kara_Stark/Kara_data/20230523_Koala_KoRV_liver_testis_eccDNA/fastq_pass/barcode08.fastq
[M::main] Real time: 14451.616 sec; CPU: 28600.170 sec; Peak RSS: 27.233 GB
[bam_sort_core] merging from 37 files...
bamFilesList: ['barcode08.fastqphaCin.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::120.761*1.83] collected minimizers
[M::mm_idx_gen::164.528*1.86] sorted minimizers
[M::main::164.529*1.86] loaded/built the index for 1907 target sequence(s)
[M::mm_mapopt_update::167.053*1.85] mid_occ = 693
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1907
[M::mm_idx_stat::168.362*1.84] distinct minimizers: 98661496 (36.82% are singletons); average occurrences: 6.101; average spacing: 5.304; total length: 3192581492
[M::worker_pipeline::2517.919*1.95] mapped 254953 sequences
[M::worker_pipeline::4896.656*1.95] mapped 247100 sequences
[M::worker_pipeline::6650.451*1.95] mapped 189611 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/Kara_Stark/Kara_data/20230523_Koala_KoRV_liver_testis_eccDNA/fastq_pass/phaCin.fa /data/zhanglab/Kara_Stark/Kara_data/20230523_Koala_KoRV_liver_testis_eccDNA/fastq_pass/barcode09.fastq
[M::main] Real time: 6650.981 sec; CPU: 12992.380 sec; Peak RSS: 23.630 GB
[bam_sort_core] merging from 8 files...
bamFilesList: ['barcode09.fastqphaCin.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::121.310*1.83] collected minimizers
[M::mm_idx_gen::165.163*1.86] sorted minimizers
[M::main::165.164*1.86] loaded/built the index for 1907 target sequence(s)
[M::mm_mapopt_update::167.684*1.85] mid_occ = 693
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1907
[M::mm_idx_stat::169.014*1.84] distinct minimizers: 98661496 (36.82% are singletons); average occurrences: 6.101; average spacing: 5.304; total length: 3192581492
[M::worker_pipeline::1008.245*1.87] mapped 40291 sequences
[M::worker_pipeline::1695.064*1.91] mapped 37393 sequences
[M::worker_pipeline::2429.564*1.92] mapped 40217 sequences
[M::worker_pipeline::3197.678*1.93] mapped 37624 sequences
[M::worker_pipeline::3578.320*1.93] mapped 19063 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/Kara_Stark/Kara_data/20230523_Koala_KoRV_liver_testis_eccDNA/fastq_pass/phaCin.fa /data/zhanglab/Kara_Stark/Kara_data/20230523_Koala_KoRV_liver_testis_eccDNA/fastq_pass/barcode10.fastq
[M::main] Real time: 3578.843 sec; CPU: 6915.590 sec; Peak RSS: 22.229 GB
[bam_sort_core] merging from 9 files...
bamFilesList: ['barcode10.fastqphaCin.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000