[M::mm_idx_gen::85.969*1.39] collected minimizers
[M::mm_idx_gen::117.149*1.52] sorted minimizers
[M::main::117.149*1.52] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::119.605*1.51] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::120.788*1.50] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::1480.114*1.95] mapped 222842 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20221013_pico-seq_miwi_4C/fastq_pass/barcode02.fastq
[M::main] Real time: 1480.534 sec; CPU: 2884.671 sec; Peak RSS: 10.903 GB
bamFilesList: ['barcode02.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::70.143*1.55] collected minimizers
[M::mm_idx_gen::100.366*1.64] sorted minimizers
[M::main::100.366*1.64] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::102.708*1.63] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::103.810*1.62] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::3053.856*1.83] mapped 271309 sequences
[M::worker_pipeline::3129.822*1.83] mapped 11533 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20221013_pico-seq_miwi_4C/fastq_pass/barcode03.fastq
[M::main] Real time: 3130.107 sec; CPU: 5737.660 sec; Peak RSS: 13.352 GB
[bam_sort_core] merging from 1 files and 1 in-memory blocks...
bamFilesList: ['barcode03.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000