[M::mm_idx_gen::104.363*1.83] collected minimizers
[M::mm_idx_gen::144.305*1.85] sorted minimizers
[M::main::144.305*1.85] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::147.106*1.83] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::148.669*1.82] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::355.631*1.92] mapped 14772 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20220812_mo_germ-cell_eccDNA/fastq_pass/SAMPLES/barcode13.fastq
[M::main] Real time: 355.758 sec; CPU: 682.096 sec; Peak RSS: 10.629 GB
bamFilesList: ['barcode13.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::100.575*1.80] collected minimizers
[M::mm_idx_gen::140.450*1.82] sorted minimizers
[M::main::140.450*1.82] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::143.302*1.81] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::144.810*1.80] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::486.361*1.93] mapped 24306 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20220812_mo_germ-cell_eccDNA/fastq_pass/SAMPLES/barcode14.fastq
[M::main] Real time: 486.904 sec; CPU: 939.843 sec; Peak RSS: 10.658 GB
bamFilesList: ['barcode14.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::100.285*1.79] collected minimizers
[M::mm_idx_gen::140.150*1.82] sorted minimizers
[M::main::140.150*1.82] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::142.946*1.80] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::144.453*1.79] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::426.556*1.92] mapped 24131 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20220812_mo_germ-cell_eccDNA/fastq_pass/SAMPLES/barcode15.fastq
[M::main] Real time: 426.695 sec; CPU: 819.748 sec; Peak RSS: 10.654 GB
bamFilesList: ['barcode15.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::100.603*1.80] collected minimizers
[M::mm_idx_gen::140.414*1.83] sorted minimizers
[M::main::140.414*1.83] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::143.202*1.81] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::144.702*1.80] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::658.696*1.95] mapped 38540 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20220812_mo_germ-cell_eccDNA/fastq_pass/SAMPLES/barcode16.fastq
[M::main] Real time: 659.197 sec; CPU: 1282.633 sec; Peak RSS: 10.662 GB
bamFilesList: ['barcode16.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::91.939*1.78] collected minimizers
[M::mm_idx_gen::128.888*1.81] sorted minimizers
[M::main::128.888*1.81] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::131.483*1.79] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::132.872*1.78] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::379.861*1.90] mapped 18123 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20220812_mo_germ-cell_eccDNA/fastq_pass/SAMPLES/barcode17.fastq
[M::main] Real time: 380.318 sec; CPU: 722.578 sec; Peak RSS: 10.653 GB
bamFilesList: ['barcode17.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::91.976*1.78] collected minimizers
[M::mm_idx_gen::128.561*1.81] sorted minimizers
[M::main::128.562*1.81] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::131.119*1.79] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::132.492*1.79] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::578.561*1.94] mapped 27426 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20220812_mo_germ-cell_eccDNA/fastq_pass/SAMPLES/barcode18.fastq
[M::main] Real time: 579.106 sec; CPU: 1124.068 sec; Peak RSS: 10.783 GB
bamFilesList: ['barcode18.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000