[M::mm_idx_gen::95.345*1.71] collected minimizers
[M::mm_idx_gen::134.286*1.76] sorted minimizers
[M::main::134.286*1.76] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::137.076*1.75] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::138.574*1.74] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::927.248*1.95] mapped 101044 sequences
[M::worker_pipeline::1712.061*1.97] mapped 103063 sequences
[M::worker_pipeline::1915.691*1.98] mapped 23664 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20211106_miwi_eccDNA_P12.5_P17.5/fastq_pass/barcode06.fastq
[M::main] Real time: 1916.125 sec; CPU: 3786.387 sec; Peak RSS: 11.443 GB
[bam_sort_core] merging from 3 files and 1 in-memory blocks...
bamFilesList: ['barcode06.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::94.173*1.71] collected minimizers
[M::mm_idx_gen::132.442*1.77] sorted minimizers
[M::main::132.442*1.77] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::135.170*1.75] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::136.657*1.74] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::882.994*1.95] mapped 100748 sequences
[M::worker_pipeline::1634.417*1.97] mapped 108838 sequences
[M::worker_pipeline::1960.461*1.98] mapped 46055 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20211106_miwi_eccDNA_P12.5_P17.5/fastq_pass/barcode07.fastq
[M::main] Real time: 1960.579 sec; CPU: 3873.791 sec; Peak RSS: 11.336 GB
[bam_sort_core] merging from 3 files and 1 in-memory blocks...
bamFilesList: ['barcode07.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::119.919*1.67] collected minimizers
[M::mm_idx_gen::167.928*1.72] sorted minimizers
[M::main::167.928*1.72] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::171.378*1.71] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::173.396*1.70] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::731.888*1.87] mapped 141785 sequences
[M::worker_pipeline::928.542*1.88] mapped 53150 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20211106_miwi_eccDNA_P12.5_P17.5/fastq_pass/barcode08.fastq
[M::main] Real time: 929.024 sec; CPU: 1747.742 sec; Peak RSS: 10.599 GB
[bam_sort_core] merging from 1 files and 1 in-memory blocks...
bamFilesList: ['barcode08.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::114.634*1.64] collected minimizers
[M::mm_idx_gen::160.918*1.70] sorted minimizers
[M::main::160.918*1.70] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::164.300*1.68] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::166.173*1.68] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::1046.585*1.88] mapped 106913 sequences
[M::worker_pipeline::1514.504*1.90] mapped 57822 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20211106_miwi_eccDNA_P12.5_P17.5/fastq_pass/barcode09.fastq
[M::main] Real time: 1514.654 sec; CPU: 2877.230 sec; Peak RSS: 11.132 GB
[bam_sort_core] merging from 2 files and 1 in-memory blocks...
bamFilesList: ['barcode09.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::103.716*1.70] collected minimizers
[M::mm_idx_gen::145.743*1.76] sorted minimizers
[M::main::145.744*1.76] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::148.759*1.74] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::150.428*1.74] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::1012.755*1.95] mapped 93474 sequences
[M::worker_pipeline::1204.264*1.96] mapped 21373 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20211106_miwi_eccDNA_P12.5_P17.5/fastq_pass/barcode10.fastq
[M::main] Real time: 1204.710 sec; CPU: 2358.670 sec; Peak RSS: 10.602 GB
[bam_sort_core] merging from 1 files and 1 in-memory blocks...
bamFilesList: ['barcode10.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000
[M::mm_idx_gen::95.062*1.71] collected minimizers
[M::mm_idx_gen::133.942*1.77] sorted minimizers
[M::main::133.942*1.77] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::136.724*1.75] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::138.220*1.74] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::1121.151*1.96] mapped 114987 sequences
[M::worker_pipeline::1587.545*1.97] mapped 49653 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20211106_miwi_eccDNA_P12.5_P17.5/fastq_pass/barcode11.fastq
[M::main] Real time: 1588.000 sec; CPU: 3127.203 sec; Peak RSS: 10.687 GB
[bam_sort_core] merging from 2 files and 1 in-memory blocks...
bamFilesList: ['barcode11.fastqmm10.sorted.bam']
binLength: 50
numberOfSamples: None
blackListFileName: None
skipZeroOverZero: False
bed_and_bin: False
genomeChunkSize: None
defaultFragmentLength: read length
numberOfProcessors: 1
verbose: False
region: None
bedFile: None
minMappingQuality: None
ignoreDuplicates: False
chrsToSkip: []
stepSize: 50
center_read: False
samFlag_include: None
samFlag_exclude: None
minFragmentLength: 0
maxFragmentLength: 0
zerosToNans: False
smoothLength: None
save_data: False
out_file_for_raw_data: None
maxPairedFragmentLength: 1000