[M::mm_idx_gen::80.694*1.66] collected minimizers
[M::mm_idx_gen::111.357*1.72] sorted minimizers
[M::main::111.357*1.72] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::113.599*1.71] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::114.711*1.70] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::407.319*1.88] mapped 42513 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20210804_mouse_miwi_eccDNA/barcode04.fastq
[M::main] Real time: 407.428 sec; CPU: 767.126 sec; Peak RSS: 10.626 GB
/var/spool/slurmd/job25799896/slurm_script: line 36: bamCoverage: command not found
[M::mm_idx_gen::80.876*1.66] collected minimizers
[M::mm_idx_gen::111.743*1.72] sorted minimizers
[M::main::111.743*1.72] loaded/built the index for 66 target sequence(s)
[M::mm_mapopt_update::114.011*1.71] mid_occ = 597
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 66
[M::mm_idx_stat::115.141*1.70] distinct minimizers: 97776310 (39.85% are singletons); average occurrences: 5.139; average spacing: 5.435; total length: 2730871774
[M::worker_pipeline::609.226*1.91] mapped 81863 sequences
[M::worker_pipeline::961.811*1.94] mapped 64012 sequences
[M::main] Version: 2.17-r974-dirty
[M::main] CMD: /data/zhanglab/oliver_chung/software/minimap2/minimap2 -ax map-ont /data/zhanglab/oliver_chung/references/mm10.fa /data/zhanglab/Kara_Stark/Kara_data/20210804_mouse_miwi_eccDNA/barcode05.fastq
[M::main] Real time: 961.899 sec; CPU: 1866.852 sec; Peak RSS: 11.398 GB
[bam_sort_core] merging from 2 files and 1 in-memory blocks...
/var/spool/slurmd/job25799896/slurm_script: line 36: bamCoverage: command not found