/data/itlab/jupyterhub/miniconda3/bin/jupyterhub-singleuser [I 2018-08-29 11:49:05.235 SingleUserNotebookApp singleuser:365] Starting jupyterhub-singleuser server version 0.8.0 [I 2018-08-29 11:49:05.246 SingleUserNotebookApp notebookapp:1366] Serving notebooks from local directory: /gpfs/fs1/home/xa2 [I 2018-08-29 11:49:05.247 SingleUserNotebookApp notebookapp:1366] 0 active kernels [I 2018-08-29 11:49:05.249 SingleUserNotebookApp notebookapp:1366] The Jupyter Notebook is running at: http://0.0.0.0:46783/user/xa2/ [I 2018-08-29 11:49:05.249 SingleUserNotebookApp notebookapp:1367] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). [I 2018-08-29 11:49:06.957 SingleUserNotebookApp log:122] 302 GET /user/xa2/ → /user/xa2/tree? (@192.168.10.42) 1.27ms [I 2018-08-29 11:49:06.997 SingleUserNotebookApp log:122] 302 GET /user/xa2/?redirects=1 → /user/xa2/tree?redirects=1 (@10.104.145.243) 0.88ms [I 2018-08-29 11:49:07.015 SingleUserNotebookApp log:122] 302 GET /user/xa2/tree?redirects=1 → /hub/api/oauth2/authorize?client_id=user-xa2&redirect_uri=%2Fuser%2Fxa2%2Foauth_callback&response_type=code&state=eyJ1dWlkIjogIjVmM2FiYWUwOWUyMzRiYzJiYzllN2U5MDE0YWZkMGE0IiwgIm5leHRfdXJsIjogIi91c2VyL3hhMi90cmVlP3JlZGlyZWN0cz0xIn0 (@10.104.145.243) 4.63ms [I 2018-08-29 11:49:07.266 SingleUserNotebookApp auth:818] Logged-in user {'kind': 'user', 'name': 'xa2', 'admin': False, 'groups': [], 'server': '/user/xa2/', 'pending': None, 'last_activity': '2018-08-29T15:49:00.864108'} [I 2018-08-29 11:49:07.267 SingleUserNotebookApp log:122] 302 GET /user/xa2/oauth_callback?code=e5ebc8b8-b4cc-464d-96e4-a6140f03f8d0&state=eyJ1dWlkIjogIjVmM2FiYWUwOWUyMzRiYzJiYzllN2U5MDE0YWZkMGE0IiwgIm5leHRfdXJsIjogIi91c2VyL3hhMi90cmVlP3JlZGlyZWN0cz0xIn0 → /user/xa2/tree?redirects=1 (@10.104.145.243) 167.67ms [I 2018-08-29 11:49:07.410 SingleUserNotebookApp log:122] 200 GET /user/xa2/tree?redirects=1 (xa2@10.104.145.243) 127.60ms [I 2018-08-29 11:49:07.830 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/tree?_=1535557747510 (xa2@10.104.145.243) 4.95ms [I 2018-08-29 11:49:07.836 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/common?_=1535557747511 (xa2@10.104.145.243) 3.52ms [I 2018-08-29 11:49:07.843 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557747512 (xa2@10.104.145.243) 1.19ms [I 2018-08-29 11:49:07.877 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1535557747513 (xa2@10.104.145.243) 3.85ms [I 2018-08-29 11:49:07.881 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557747514 (xa2@10.104.145.243) 1.68ms [I 2018-08-29 11:49:07.948 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents?type=directory&_=1535557747515 (xa2@10.104.145.243) 32.88ms [W 2018-08-29 11:49:09.361 SingleUserNotebookApp web:1587] 404 GET /user/xa2/api/kernels/d10fa6df-2751-4f1a-b1e7-0df491bee94f/channels?session_id=60A97BC4790047EF93F24839C8D8FF04 (10.104.145.243): Kernel does not exist: d10fa6df-2751-4f1a-b1e7-0df491bee94f [W 2018-08-29 11:49:09.374 SingleUserNotebookApp log:122] 404 GET /user/xa2/api/kernels/d10fa6df-2751-4f1a-b1e7-0df491bee94f/channels?session_id=60A97BC4790047EF93F24839C8D8FF04 (xa2@10.104.145.243) 33.08ms [I 2018-08-29 11:49:09.805 SingleUserNotebookApp log:122] 200 GET /user/xa2/tree/data_Hazel (xa2@10.104.145.243) 3.27ms [I 2018-08-29 11:49:10.171 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/tree?_=1535557749873 (xa2@10.104.145.243) 4.57ms [I 2018-08-29 11:49:10.176 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/common?_=1535557749874 (xa2@10.104.145.243) 3.68ms [I 2018-08-29 11:49:10.178 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557749875 (xa2@10.104.145.243) 1.30ms [I 2018-08-29 11:49:10.185 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1535557749876 (xa2@10.104.145.243) 1.22ms [I 2018-08-29 11:49:10.188 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557749877 (xa2@10.104.145.243) 1.30ms [I 2018-08-29 11:49:10.226 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1535557749878 (xa2@10.104.145.243) 13.07ms [I 2018-08-29 11:49:11.388 SingleUserNotebookApp log:122] 200 GET /user/xa2/tree/data_Hazel/chipseq (xa2@10.104.145.243) 3.69ms [I 2018-08-29 11:49:11.827 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/tree?_=1535557751505 (xa2@10.104.145.243) 5.33ms [I 2018-08-29 11:49:11.832 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/common?_=1535557751506 (xa2@10.104.145.243) 3.47ms [I 2018-08-29 11:49:11.846 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557751507 (xa2@10.104.145.243) 1.70ms [I 2018-08-29 11:49:11.858 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1535557751508 (xa2@10.104.145.243) 2.27ms [I 2018-08-29 11:49:11.860 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557751509 (xa2@10.104.145.243) 1.11ms [I 2018-08-29 11:49:11.923 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/chipseq?type=directory&_=1535557751510 (xa2@10.104.145.243) 6.88ms [I 2018-08-29 11:49:14.002 SingleUserNotebookApp log:122] 200 GET /user/xa2/tree/data_Hazel/chipseq/take2 (xa2@10.104.145.243) 3.45ms [I 2018-08-29 11:49:14.379 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/tree?_=1535557754079 (xa2@10.104.145.243) 5.28ms [I 2018-08-29 11:49:14.383 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/common?_=1535557754080 (xa2@10.104.145.243) 3.60ms [I 2018-08-29 11:49:14.386 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557754081 (xa2@10.104.145.243) 1.14ms [I 2018-08-29 11:49:14.396 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1535557754082 (xa2@10.104.145.243) 1.26ms [I 2018-08-29 11:49:14.399 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557754083 (xa2@10.104.145.243) 1.49ms [I 2018-08-29 11:49:14.444 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/chipseq/take2?type=directory&_=1535557754084 (xa2@10.104.145.243) 7.47ms [I 2018-08-29 11:49:16.396 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/tree?_=1535557756019 (xa2@10.104.145.243) 5.39ms [I 2018-08-29 11:49:16.401 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/common?_=1535557756020 (xa2@10.104.145.243) 3.95ms [I 2018-08-29 11:49:16.415 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557756021 (xa2@10.104.145.243) 1.86ms [I 2018-08-29 11:49:16.425 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1535557756022 (xa2@10.104.145.243) 1.86ms [I 2018-08-29 11:49:16.429 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557756023 (xa2@10.104.145.243) 1.53ms [I 2018-08-29 11:49:16.470 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/chipseq?type=directory&_=1535557756024 (xa2@10.104.145.243) 5.99ms [I 2018-08-29 11:49:17.398 SingleUserNotebookApp log:122] 200 GET /user/xa2/tree/data_Hazel/chipseq/ipynb (xa2@10.104.145.243) 3.51ms [I 2018-08-29 11:49:17.881 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/tree?_=1535557757495 (xa2@10.104.145.243) 4.23ms [I 2018-08-29 11:49:17.888 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/common?_=1535557757496 (xa2@10.104.145.243) 6.12ms [I 2018-08-29 11:49:17.892 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557757497 (xa2@10.104.145.243) 1.73ms [I 2018-08-29 11:49:17.899 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1535557757498 (xa2@10.104.145.243) 1.25ms [I 2018-08-29 11:49:18.012 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557757499 (xa2@10.104.145.243) 1.68ms [I 2018-08-29 11:49:18.036 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/chipseq/ipynb?type=directory&_=1535557757500 (xa2@10.104.145.243) 14.13ms [I 2018-08-29 11:49:19.956 SingleUserNotebookApp log:122] 200 GET /user/xa2/notebooks/data_Hazel/chipseq/ipynb/differential_binding_take2_reverse.ipynb (xa2@10.104.145.243) 71.23ms [I 2018-08-29 11:49:20.600 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/notebook?_=1535557760132 (xa2@10.104.145.243) 4.74ms [I 2018-08-29 11:49:20.604 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/common?_=1535557760133 (xa2@10.104.145.243) 3.55ms [W 2018-08-29 11:49:20.815 SingleUserNotebookApp manager:458] Notebook data_Hazel/chipseq/ipynb/differential_binding_take2_reverse.ipynb is not trusted [I 2018-08-29 11:49:20.905 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/chipseq/ipynb/differential_binding_take2_reverse.ipynb?type=notebook&_=1535557760134 (xa2@10.104.145.243) 241.57ms [W 2018-08-29 11:49:20.913 SingleUserNotebookApp log:122] 404 GET /user/xa2/nbextensions/widgets/notebook/js/extension.js?v=20180829114904 (xa2@10.104.145.243) 3.08ms [I 2018-08-29 11:49:23.455 SingleUserNotebookApp kernelmanager:98] Kernel started: 09d764b9-f7c5-4a4b-8051-151cb50db1c4 [I 2018-08-29 11:49:23.457 SingleUserNotebookApp log:122] 201 POST /user/xa2/api/sessions (xa2@10.104.145.243) 50.31ms [I 2018-08-29 11:49:23.465 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/chipseq/ipynb/differential_binding_take2_reverse.ipynb/checkpoints?_=1535557760135 (xa2@10.104.145.243) 5.34ms [I 2018-08-29 11:49:26.374 SingleUserNotebookApp log:122] 101 GET /user/xa2/api/kernels/09d764b9-f7c5-4a4b-8051-151cb50db1c4/channels?session_id=45B1D62D63BD40079696062A74F87C76 (xa2@10.104.145.243) 2570.57ms [W 2018-08-29 11:49:26.398 SingleUserNotebookApp handlers:257] Replacing stale connection: d10fa6df-2751-4f1a-b1e7-0df491bee94f:60A97BC4790047EF93F24839C8D8FF04 [W 2018-08-29 11:53:59.391 SingleUserNotebookApp handlers:257] Replacing stale connection: d10fa6df-2751-4f1a-b1e7-0df491bee94f:60A97BC4790047EF93F24839C8D8FF04 [I 2018-08-29 11:58:32.617 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/chipseq/ipynb/differential_binding_take2_reverse.ipynb?content=0&_=1535557760136 (xa2@10.104.145.243) 29.50ms [I 2018-08-29 11:58:32.821 SingleUserNotebookApp handlers:181] Saving file at /data_Hazel/chipseq/ipynb/differential_binding_take2_reverse.ipynb [W 2018-08-29 11:58:32.823 SingleUserNotebookApp manager:442] Saving untrusted notebook data_Hazel/chipseq/ipynb/differential_binding_take2_reverse.ipynb [I 2018-08-29 11:58:33.055 SingleUserNotebookApp log:122] 200 PUT /user/xa2/api/contents/data_Hazel/chipseq/ipynb/differential_binding_take2_reverse.ipynb (xa2@10.104.145.243) 282.49ms [I 2018-08-29 11:58:33.081 SingleUserNotebookApp log:122] 201 POST /user/xa2/api/contents/data_Hazel/chipseq/ipynb/differential_binding_take2_reverse.ipynb/checkpoints (xa2@10.104.145.243) 6.75ms [W 2018-08-29 11:59:03.447 SingleUserNotebookApp handlers:257] Replacing stale connection: d10fa6df-2751-4f1a-b1e7-0df491bee94f:60A97BC4790047EF93F24839C8D8FF04 [I 2018-08-29 11:59:19.485 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1535557757501 (xa2@10.104.145.243) 2.22ms [I 2018-08-29 11:59:19.497 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1535557757502 (xa2@10.104.145.243) 1.71ms [I 2018-08-29 11:59:19.613 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/chipseq/ipynb?type=directory&_=1535557757503 (xa2@10.104.145.243) 15.70ms [I 2018-08-29 11:59:21.364 SingleUserNotebookApp log:122] 200 GET /user/xa2/notebooks/data_Hazel/chipseq/ipynb/differential_binding_take2.ipynb (xa2@10.104.145.243) 6.48ms [I 2018-08-29 11:59:22.785 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/notebook?_=1535558361574 (xa2@10.104.145.243) 6.49ms [I 2018-08-29 11:59:22.792 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/common?_=1535558361575 (xa2@10.104.145.243) 5.23ms [W 2018-08-29 11:59:23.048 SingleUserNotebookApp manager:458] Notebook data_Hazel/chipseq/ipynb/differential_binding_take2.ipynb is not trusted [I 2018-08-29 11:59:23.142 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/chipseq/ipynb/differential_binding_take2.ipynb?type=notebook&_=1535558361576 (xa2@10.104.145.243) 248.58ms [W 2018-08-29 11:59:23.151 SingleUserNotebookApp log:122] 404 GET /user/xa2/nbextensions/widgets/notebook/js/extension.js?v=20180829114904 (xa2@10.104.145.243) 3.36ms [I 2018-08-29 11:59:25.950 SingleUserNotebookApp kernelmanager:98] Kernel started: ab12e806-2a5f-4bcf-94b4-7608ed8fa654 [I 2018-08-29 11:59:25.953 SingleUserNotebookApp log:122] 201 POST /user/xa2/api/sessions (xa2@10.104.145.243) 25.83ms [I 2018-08-29 11:59:25.959 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/chipseq/ipynb/differential_binding_take2.ipynb/checkpoints?_=1535558361577 (xa2@10.104.145.243) 3.75ms [I 2018-08-29 11:59:28.298 SingleUserNotebookApp log:122] 101 GET /user/xa2/api/kernels/ab12e806-2a5f-4bcf-94b4-7608ed8fa654/channels?session_id=2524350A393144998E654171245111E8 (xa2@10.104.145.243) 2031.84ms [W 2018-08-29 13:33:58.300 SingleUserNotebookApp zmqhandlers:193] WebSocket ping timeout after 119997 ms. slurmstepd: error: *** JOB 3113530 ON x1-01-1 CANCELLED AT 2018-08-29T13:49:18 DUE TO TIME LIMIT *** [C 2018-08-29 13:49:18.589 SingleUserNotebookApp notebookapp:1222] received signal 15, stopping [I 2018-08-29 13:49:18.594 SingleUserNotebookApp notebookapp:1308] Shutting down kernels [I 2018-08-29 13:49:18.695 SingleUserNotebookApp multikernelmanager:138] Kernel shutdown: 09d764b9-f7c5-4a4b-8051-151cb50db1c4 [I 2018-08-29 13:49:18.697 SingleUserNotebookApp multikernelmanager:138] Kernel shutdown: ab12e806-2a5f-4bcf-94b4-7608ed8fa654