/data/itlab/jupyterhub/miniconda3/bin/jupyterhub-singleuser [I 2018-07-23 10:36:00.056 SingleUserNotebookApp singleuser:365] Starting jupyterhub-singleuser server version 0.8.0 [I 2018-07-23 10:36:00.066 SingleUserNotebookApp notebookapp:1366] Serving notebooks from local directory: /gpfs/fs1/home/xa2 [I 2018-07-23 10:36:00.066 SingleUserNotebookApp notebookapp:1366] 0 active kernels [I 2018-07-23 10:36:00.068 SingleUserNotebookApp notebookapp:1366] The Jupyter Notebook is running at: http://0.0.0.0:54105/user/xa2/ [I 2018-07-23 10:36:00.068 SingleUserNotebookApp notebookapp:1367] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). [I 2018-07-23 10:36:03.844 SingleUserNotebookApp log:122] 302 GET /user/xa2/ → /user/xa2/tree? (@192.168.10.42) 1.29ms [I 2018-07-23 10:36:03.914 SingleUserNotebookApp log:122] 302 GET /user/xa2/tree/data_Hazel?redirects=1 → /hub/api/oauth2/authorize?client_id=user-xa2&redirect_uri=%2Fuser%2Fxa2%2Foauth_callback&response_type=code&state=eyJ1dWlkIjogIjc5MDg4OTM0YjRjYTRlYjZiZWNkMmZmOTNkNzQ5ZjFiIiwgIm5leHRfdXJsIjogIi91c2VyL3hhMi90cmVlL2RhdGFfSGF6ZWw_cmVkaXJlY3RzPTEifQ (@10.104.145.243) 4.69ms [I 2018-07-23 10:36:04.162 SingleUserNotebookApp auth:818] Logged-in user {'kind': 'user', 'name': 'xa2', 'admin': False, 'groups': [], 'server': '/user/xa2/', 'pending': None, 'last_activity': '2018-07-23T14:35:56.052066'} [I 2018-07-23 10:36:04.163 SingleUserNotebookApp log:122] 302 GET /user/xa2/oauth_callback?code=dbb69b26-08c1-4f10-b299-a13cdf897ca0&state=eyJ1dWlkIjogIjc5MDg4OTM0YjRjYTRlYjZiZWNkMmZmOTNkNzQ5ZjFiIiwgIm5leHRfdXJsIjogIi91c2VyL3hhMi90cmVlL2RhdGFfSGF6ZWw_cmVkaXJlY3RzPTEifQ → /user/xa2/tree/data_Hazel?redirects=1 (@10.104.145.243) 170.59ms [I 2018-07-23 10:36:04.285 SingleUserNotebookApp log:122] 200 GET /user/xa2/tree/data_Hazel?redirects=1 (xa2@10.104.145.243) 109.16ms [I 2018-07-23 10:36:07.186 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/tree?_=1532356564908 (xa2@10.104.145.243) 5.76ms [I 2018-07-23 10:36:07.191 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/common?_=1532356564909 (xa2@10.104.145.243) 3.48ms [I 2018-07-23 10:36:07.207 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564910 (xa2@10.104.145.243) 1.66ms [I 2018-07-23 10:36:07.234 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/kernelspecs (xa2@10.104.145.243) 21.88ms [I 2018-07-23 10:36:07.237 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564912 (xa2@10.104.145.243) 1.63ms [I 2018-07-23 10:36:07.241 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564911 (xa2@10.104.145.243) 3.09ms [I 2018-07-23 10:36:07.286 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564913 (xa2@10.104.145.243) 10.23ms [I 2018-07-23 10:37:07.245 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564914 (xa2@10.104.145.243) 2.17ms [I 2018-07-23 10:37:07.248 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564915 (xa2@10.104.145.243) 1.78ms [I 2018-07-23 10:37:07.268 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564916 (xa2@10.104.145.243) 7.42ms [I 2018-07-23 10:38:07.239 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564917 (xa2@10.104.145.243) 2.66ms [I 2018-07-23 10:38:07.243 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564918 (xa2@10.104.145.243) 1.68ms [I 2018-07-23 10:38:07.264 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564919 (xa2@10.104.145.243) 8.53ms [I 2018-07-23 10:39:07.233 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564920 (xa2@10.104.145.243) 1.99ms [I 2018-07-23 10:39:07.241 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564921 (xa2@10.104.145.243) 1.62ms [I 2018-07-23 10:39:07.260 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564922 (xa2@10.104.145.243) 6.50ms [I 2018-07-23 10:40:07.234 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564923 (xa2@10.104.145.243) 2.19ms [I 2018-07-23 10:40:07.238 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564924 (xa2@10.104.145.243) 1.67ms [I 2018-07-23 10:40:07.257 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564925 (xa2@10.104.145.243) 7.70ms [I 2018-07-23 10:41:07.259 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564926 (xa2@10.104.145.243) 26.69ms [I 2018-07-23 10:41:07.261 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564927 (xa2@10.104.145.243) 1.17ms [I 2018-07-23 10:41:07.282 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564928 (xa2@10.104.145.243) 7.23ms [I 2018-07-23 10:42:07.254 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564929 (xa2@10.104.145.243) 3.11ms [I 2018-07-23 10:42:07.258 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564930 (xa2@10.104.145.243) 1.79ms [I 2018-07-23 10:42:07.277 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564931 (xa2@10.104.145.243) 7.20ms [I 2018-07-23 10:43:07.258 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564932 (xa2@10.104.145.243) 1.91ms [I 2018-07-23 10:43:07.261 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564933 (xa2@10.104.145.243) 1.62ms [I 2018-07-23 10:43:07.281 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564934 (xa2@10.104.145.243) 7.34ms [I 2018-07-23 10:44:07.241 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564935 (xa2@10.104.145.243) 1.90ms [I 2018-07-23 10:44:07.249 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564936 (xa2@10.104.145.243) 1.62ms [I 2018-07-23 10:44:07.265 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564937 (xa2@10.104.145.243) 7.17ms [I 2018-07-23 10:45:07.253 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564938 (xa2@10.104.145.243) 2.17ms [I 2018-07-23 10:45:07.257 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564939 (xa2@10.104.145.243) 1.62ms [I 2018-07-23 10:45:07.275 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564940 (xa2@10.104.145.243) 7.26ms [I 2018-07-23 10:46:07.283 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564941 (xa2@10.104.145.243) 25.49ms [I 2018-07-23 10:46:07.287 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564942 (xa2@10.104.145.243) 1.64ms [I 2018-07-23 10:46:07.308 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564943 (xa2@10.104.145.243) 7.51ms [I 2018-07-23 10:47:07.261 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564944 (xa2@10.104.145.243) 2.11ms [I 2018-07-23 10:47:07.264 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564945 (xa2@10.104.145.243) 1.64ms [I 2018-07-23 10:47:07.284 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564946 (xa2@10.104.145.243) 7.26ms [I 2018-07-23 10:49:26.734 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564947 (xa2@10.104.145.243) 2.22ms [I 2018-07-23 10:49:26.738 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564948 (xa2@10.104.145.243) 1.64ms [I 2018-07-23 10:49:26.762 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564949 (xa2@10.104.145.243) 5.76ms [I 2018-07-23 11:00:14.264 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/sessions?_=1532356564950 (xa2@10.104.145.243) 25.35ms [I 2018-07-23 11:00:14.267 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/terminals?_=1532356564951 (xa2@10.104.145.243) 1.65ms [I 2018-07-23 11:00:14.296 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel?type=directory&_=1532356564952 (xa2@10.104.145.243) 7.63ms [I 2018-07-23 11:00:16.501 SingleUserNotebookApp log:122] 200 GET /user/xa2/notebooks/data_Hazel/differential_binding_AB_ts.ipynb (xa2@10.104.145.243) 101.47ms [I 2018-07-23 11:00:18.095 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/notebook?_=1532358016951 (xa2@10.104.145.243) 5.48ms [I 2018-07-23 11:00:18.102 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/config/common?_=1532358016952 (xa2@10.104.145.243) 5.47ms [I 2018-07-23 11:00:18.225 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/kernelspecs (xa2@10.104.145.243) 4.41ms [W 2018-07-23 11:00:18.395 SingleUserNotebookApp manager:458] Notebook data_Hazel/differential_binding_AB_ts.ipynb is not trusted [I 2018-07-23 11:00:18.459 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/differential_binding_AB_ts.ipynb?type=notebook&_=1532358016953 (xa2@10.104.145.243) 188.90ms [W 2018-07-23 11:00:18.489 SingleUserNotebookApp log:122] 404 GET /user/xa2/nbextensions/widgets/notebook/js/extension.js?v=20180723103558 (xa2@10.104.145.243) 19.23ms [I 2018-07-23 11:00:20.723 SingleUserNotebookApp kernelmanager:98] Kernel started: 0b8a02b1-93e7-40dd-b9c4-a61754ec3ac0 [I 2018-07-23 11:00:20.725 SingleUserNotebookApp log:122] 201 POST /user/xa2/api/sessions (xa2@10.104.145.243) 66.64ms [I 2018-07-23 11:00:20.732 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/differential_binding_AB_ts.ipynb/checkpoints?_=1532358016954 (xa2@10.104.145.243) 4.91ms [I 2018-07-23 11:00:23.089 SingleUserNotebookApp log:122] 101 GET /user/xa2/api/kernels/0b8a02b1-93e7-40dd-b9c4-a61754ec3ac0/channels?session_id=0DA2F5CD38074FF88C98694C78C5CC89 (xa2@10.104.145.243) 2030.41ms [W 2018-07-23 11:04:16.797 SingleUserNotebookApp web:1587] 404 GET /user/xa2/notebooks/data_Hazel/results/chip_seq/plots/DMSO_JQ1.diffBind_MA.pdf (10.104.145.243): No such file or directory: data_Hazel/results/chip_seq/plots/DMSO_JQ1.diffBind_MA.pdf [W 2018-07-23 11:04:16.802 SingleUserNotebookApp log:122] 404 GET /user/xa2/notebooks/data_Hazel/results/chip_seq/plots/DMSO_JQ1.diffBind_MA.pdf (xa2@10.104.145.243) 7.52ms [I 2018-07-23 11:04:20.935 SingleUserNotebookApp log:122] 200 GET /user/xa2/api/contents/data_Hazel/differential_binding_AB_ts.ipynb?content=0&_=1532358016955 (xa2@10.104.145.243) 3.06ms [I 2018-07-23 11:04:21.018 SingleUserNotebookApp handlers:181] Saving file at /data_Hazel/differential_binding_AB_ts.ipynb [W 2018-07-23 11:04:21.020 SingleUserNotebookApp manager:442] Saving untrusted notebook data_Hazel/differential_binding_AB_ts.ipynb [I 2018-07-23 11:04:21.176 SingleUserNotebookApp log:122] 200 PUT /user/xa2/api/contents/data_Hazel/differential_binding_AB_ts.ipynb (xa2@10.104.145.243) 177.61ms [W 2018-07-23 11:49:53.092 SingleUserNotebookApp zmqhandlers:193] WebSocket ping timeout after 119996 ms. [I 2018-07-23 12:33:46.244 SingleUserNotebookApp log:122] 101 GET /user/xa2/api/kernels/0b8a02b1-93e7-40dd-b9c4-a61754ec3ac0/channels?session_id=0DA2F5CD38074FF88C98694C78C5CC89 (xa2@10.104.145.243) 28.36ms slurmstepd: error: *** JOB 2652560 ON x1-01-1 CANCELLED AT 2018-07-23T12:36:17 DUE TO TIME LIMIT *** [C 2018-07-23 12:36:17.769 SingleUserNotebookApp notebookapp:1222] received signal 15, stopping [I 2018-07-23 12:36:17.773 SingleUserNotebookApp notebookapp:1308] Shutting down kernels [I 2018-07-23 12:36:17.875 SingleUserNotebookApp multikernelmanager:138] Kernel shutdown: 0b8a02b1-93e7-40dd-b9c4-a61754ec3ac0