/bin/ls: cannot access /data/reddylab/Hazel/chipseq/KLJR_180920/processing/chip_seq/OCI_JQ1res-se-with-control/OCI-AML2_JQ1Res*bam: No such file or directory
Factor is: OCI-AML2.H3K27me3.Parental.rep1, file is: /data/reddylab/Hazel/chipseq/KLJR_180920/processing/chip_seq/OCI_JQ1res-se-with-control/OCI-AML2.H3K27me3.Parental.rep1.masked.dedup.sorted.bam
/data/reddylab/Hazel/chipseq/KLJR_180920/processing/chip_seq/OCI_JQ1res-se-with-control/OCI-AML2.H3K27me3.Parental.rep1.masked.dups_marked.bam
Flowcell is: OCI-AML2_JQ1Res, Input control is: 
Sample, /data/reddylab/Hazel/chipseq/KLJR_180920/processing/chip_seq/OCI_JQ1res-se-with-control/OCI-AML2.H3K27me3.Parental.rep1.masked.dedup.sorted.bam
/data/reddylab/Hazel/chipseq/KLJR_180920/processing/chip_seq/OCI_JQ1res-se-with-control/OCI-AML2.H3K27me3.Parental.rep1.masked.dups_marked.bam, has no controls
The number of labels does not match the number of BAM files.