track GGR_Hi_C
superTrack on show
shortLabel Hi_C
longLabel GGR_Hi_C_tracks
yLineOnOff off
alwaysZero on
autoScale off
smoothingWindow off
maxHeightPixels 100:32:8
gridDefault on
graphTypeDefault bar
transformFunc NONE
windowingFunction mean
maxWindowToQuery 100000
itemRgb on

    track GGR_Hi_C_loops
    type bigBed 12
    shortLabel loops
    longLabel GGR_Hi_C_loops
    parent GGR_Hi_C
    bigDataUrl data/hi_c/iter0/loops.annot.UCSC.bb

    track GGR_Hi_C_tads_5kb
    type bigBed 3
    shortLabel 5kb
    longLabel GGR_Hi_C_tads_5kb
    parent GGR_Hi_C
    subGroups dist=5kb
    bigDataUrl data/hi_c/iter0/5kb.tads.bb

    track GGR_Hi_C_tads_10kb
    type bigBed 3
    shortLabel 10kb
    longLabel GGR_Hi_C_tads_10kb
    parent GGR_Hi_C
    subGroups dist=10kb
    bigDataUrl data/hi_c/iter0/10kb.tads.bb

    track GGR_Hi_C_tads_25kb
    type bigBed 3
    shortLabel 25kb
    longLabel GGR_Hi_C_tads_25kb
    parent GGR_Hi_C
    subGroups dist=25kb
    bigDataUrl data/hi_c/iter0/25kb.tads.bb

    track GGR_Hi_C_directionality_index_soO000_5
    type bigWig -500 500
    container multiWig
    aggregate solidOverlay
    showSubtrackColorOnUi on
    shortLabel GGR_Hi_C_directionality_index_soO000_5
    longLabel GGR_Hi_C_directionality_index_soO000_5
    parent GGR_Hi_C
    visibility full


            track GGR_Hi_C_directionality_index_stO000_5_plus
            type bigWig
            parent GGR_Hi_C_directionality_index_soO000_5
            bigDataUrl data/hi_c/iter0/5kb.DI.plus.bw
            color 102,0,102

            track GGR_Hi_C_directionality_index_stO001_5_minus
            type bigWig
            parent GGR_Hi_C_directionality_index_soO000_5
            bigDataUrl data/hi_c/iter0/5kb.DI.minus.bw
            color 102,0,51

    track GGR_Hi_C_directionality_index_soO001_10
    type bigWig -500 500
    container multiWig
    aggregate solidOverlay
    showSubtrackColorOnUi on
    shortLabel GGR_Hi_C_directionality_index_soO001_10
    longLabel GGR_Hi_C_directionality_index_soO001_10
    parent GGR_Hi_C
    visibility full


            track GGR_Hi_C_directionality_index_stO000_10_plus
            type bigWig
            parent GGR_Hi_C_directionality_index_soO001_10
            bigDataUrl data/hi_c/iter0/10kb.DI.plus.bw
            color 102,0,102

            track GGR_Hi_C_directionality_index_stO001_10_minus
            type bigWig
            parent GGR_Hi_C_directionality_index_soO001_10
            bigDataUrl data/hi_c/iter0/10kb.DI.minus.bw
            color 102,0,51

    track GGR_Hi_C_directionality_index_soO002_25
    type bigWig -500 500
    container multiWig
    aggregate solidOverlay
    showSubtrackColorOnUi on
    shortLabel GGR_Hi_C_directionality_index_soO002_25
    longLabel GGR_Hi_C_directionality_index_soO002_25
    parent GGR_Hi_C
    visibility full


            track GGR_Hi_C_directionality_index_stO000_25_plus
            type bigWig
            parent GGR_Hi_C_directionality_index_soO002_25
            bigDataUrl data/hi_c/iter0/25kb.DI.plus.bw
            color 102,0,102

            track GGR_Hi_C_directionality_index_stO001_25_minus
            type bigWig
            parent GGR_Hi_C_directionality_index_soO002_25
            bigDataUrl data/hi_c/iter0/25kb.DI.minus.bw
            color 102,0,51