hub gm_hic_arc_track
shortLabel gm_hic_arc_track
longLabel Example Hub for useOneFile option
useOneFile on
email yu.xiang@duke.edu

genome hg38


track GM_HiCAR_heatmap
type hic
drawMode triangle
shortLabel GM_HiCAR_heatmap
longLabel GM_HiCAR_heatmap
color 255,0,0
saturationScore 50
normalization NONE
resolution 10000
autoScale off
visibility full
bigDataUrl GM12878.hic


track gm_HiCAR
type bigInteract
visibility full
shortLabel gm_HiCAR
longLabel gm_HiCAR
bigDataUrl gm_10k.bb
maxHeightPixels 100:50:20
interactUp false

track gm_hiccups
type bigInteract
visibility full
shortLabel gm_hiccups
longLabel gm_hiccups
bigDataUrl gm_hiccups_hg38_5k.bb
maxHeightPixels 100:50:20
interactUp false

track gm_Smc1a_HiChIP
type bigInteract
visibility full
shortLabel gm_Smc1a_HiChIP
longLabel gm_Smc1a_HiChIP
bigDataUrl gm_Smc1a_hg38_5k.bb
maxHeightPixels 100:50:20
interactUp false


track hicar_GM12878_1d
type bigWig
bigDataUrl GM12878.macs2.bw 
viewLimits 0:1
smoothingWindow 2
shortLabel GM12878_1D
longLabel GM12878_1D
visibility full
autoScale off
alwaysZero On
color 0, 51, 204
maxHeightPixels 100:20:8
windowingFunction maximum

# previouse GM atac track #https://www.encodeproject.org/files/ENCFF603BJO/@@download/ENCFF603BJO.bigWig

## histone marker track 

track GM_H3K27ac
type bigWig
smoothingWindow 2
viewLimits 0:15
bigDataUrl https://www.encodeproject.org/files/ENCFF469WVA/@@download/ENCFF469WVA.bigWig
shortLabel GM_H3K27ac
longLabel GM_H3K27ac  
visibility full
autoScale off
alwaysZero On
color 255, 153, 51
maxHeightPixels 100:20:8
windowingFunction maximum


track GM_RNA
viewLimits 0:10
bigDataUrl GM12878_RNA.bigWig
shortLabel GM_RNA
longLabel GM_RNA
type bigWig
color 255, 0, 0
visibility full
maxHeightPixels 100:20:8
autoScale off
windowingFunction maximum
configurable on


track GM_CTCF
type bigWig
smoothingWindow 2
viewLimits 0:15
bigDataUrl https://www.encodeproject.org/files/ENCFF485CGE/@@download/ENCFF485CGE.bigWig
shortLabel GM_CTCF
longLabel GM_CTCF
visibility full
autoScale off
alwaysZero On
color 0, 51, 153
maxHeightPixels 100:20:8
windowingFunction maximum


track GM_H3K4me3
type bigWig
smoothingWindow 2
viewLimits 0:15
bigDataUrl https://www.encodeproject.org/files/ENCFF287HAO/@@download/ENCFF287HAO.bigWig
shortLabel GM_H3K4me3
longLabel GM_H3K4me3
visibility full
autoScale off
alwaysZero On
color 255, 204, 0
maxHeightPixels 100:20:8
windowingFunction maximum


track GM_H3K27me3
type bigWig
smoothingWindow 2
viewLimits 0:15
bigDataUrl https://www.encodeproject.org/files/ENCFF919DOR/@@download/ENCFF919DOR.bigWig
shortLabel GM_H3K27me3
longLabel GM_H3K27me3
visibility full
autoScale off
alwaysZero On
color 102, 0, 255
maxHeightPixels 100:20:8
windowingFunction maximum