hub h1_GM_npc_dhs
shortLabel h1_GM_npc_dhs
longLabel Example Hub for useOneFile option
useOneFile on
email yu.xiang@duke.edu

genome hg38


## atac track 

track hicar_h1_1d
type bigWig
bigDataUrl hicar_re1p.final.R2.macs2.bw
viewLimits 0:1
smoothingWindow 2
shortLabel h1_1D
longLabel h1_1D
visibility full
autoScale off
alwaysZero On
color 0,102,255
maxHeightPixels 100:20:8
windowingFunction maximum

track hicar_npc_1d
type bigWig
bigDataUrl H1_NPC.macs2.bw
viewLimits 0:1
smoothingWindow 2
shortLabel npc_1D
longLabel npc_1D
visibility full
autoScale off
alwaysZero On
color 0,102,255
maxHeightPixels 100:20:8
windowingFunction maximum

track hicar_me_1d
type bigWig
bigDataUrl H1_ME.macs2.bw
viewLimits 0:1
smoothingWindow 2
shortLabel me_1D
longLabel me_1D
visibility full
autoScale off
alwaysZero On
color 0,102,255
maxHeightPixels 100:20:8
windowingFunction maximum


track hicar_GM12878_1d
type bigWig
bigDataUrl GM12878.macs2.bw 
viewLimits 0:1
smoothingWindow 2
shortLabel GM12878_1D
longLabel GM12878_1D
visibility full
autoScale off
alwaysZero On
color 0,102,255
maxHeightPixels 100:20:8
windowingFunction maximum

# previouse GM atac track #https://www.encodeproject.org/files/ENCFF603BJO/@@download/ENCFF603BJO.bigWig

## histone marker track 

track GM_H3K27ac-human
type bigWig
smoothingWindow 2
viewLimits 0:15
bigDataUrl https://www.encodeproject.org/files/ENCFF469WVA/@@download/ENCFF469WVA.bigWig
shortLabel GM_H3K27ac
longLabel GM_H3K27ac  
visibility full
autoScale off
alwaysZero On
color 255,153,51
maxHeightPixels 100:20:8
windowingFunction maximum




track h1_H3K27ac-human
type bigWig
smoothingWindow 2
viewLimits 0:15
bigDataUrl https://www.encodeproject.org/files/ENCFF986PCY/@@download/ENCFF986PCY.bigWig
shortLabel h1_H3K27ac
longLabel h1_H3K27ac  
visibility full
autoScale off
alwaysZero On
color 255,153,51
maxHeightPixels 100:20:8
windowingFunction maximum



# me 
track me_H3K27ac-human
type bigWig
smoothingWindow 2
viewLimits 0:15
bigDataUrl https://www.encodeproject.org/files/ENCFF052XMR/@@download/ENCFF052XMR.bigWig
shortLabel me_H3K27ac
longLabel me_H3K27ac  
visibility full
autoScale off
alwaysZero On
color 255,153,51
maxHeightPixels 100:20:8
windowingFunction maximum




# npc 
track npc_H3K27ac-human
type bigWig
smoothingWindow 2
viewLimits 0:15
bigDataUrl https://www.encodeproject.org/files/ENCFF110SOE/@@download/ENCFF110SOE.bigWig
shortLabel npc_H3K27ac
longLabel npc_H3K27ac  
visibility full
autoScale off
alwaysZero On
color 255,153,51
maxHeightPixels 100:20:8
windowingFunction maximum





## dhs track



# me 
track me_DHS
type bigWig
smoothingWindow 2
viewLimits 0:15
bigDataUrl https://www.encodeproject.org/files/ENCFF100WFU/@@download/ENCFF100WFU.bigWig
shortLabel me_DHS
longLabel me_DHS
visibility full
autoScale off
alwaysZero On
color 255,153,51
maxHeightPixels 100:20:8
windowingFunction maximum

# npc 
track npc_DHS
type bigWig
smoothingWindow 2
viewLimits 0:15
bigDataUrl https://www.encodeproject.org/files/ENCFF287XRW/@@download/ENCFF287XRW.bigWig
shortLabel npc_DHS
longLabel npc_DHS
visibility full
autoScale off
alwaysZero On
color 255,153,51
maxHeightPixels 100:20:8
windowingFunction maximum

track GM_ATAC
type bigWig
smoothingWindow 2
viewLimits 0:15
bigDataUrl https://www.encodeproject.org/files/ENCFF745TKD/@@download/ENCFF745TKD.bigWig
shortLabel GM_ATAC
longLabel GM_ATAC
visibility full
autoScale off
alwaysZero On
color 255,153,51
maxHeightPixels 100:20:8
windowingFunction maximum

track h1_ATAC
type bigWig
bigDataUrl 4dn_donw_sample_r2_treat_pileup.bw
viewLimits 0:1
smoothingWindow 2
shortLabel h1_ATAC
longLabel h1_ATAC
visibility full
autoScale off
alwaysZero On
color 0,102,255
maxHeightPixels 100:20:8
windowingFunction maximum