hub hicar_loop_10KB
shortLabel hicar_loop_10KB
longLabel Example Hub for useOneFile option
useOneFile on
email yu.xiang@duke.edu

genome hg38

# track maps_loos
# type bigInteract
# visibility full
# shortLabel 50kloop
# longLabel hicarloop_50k
# spectrum on
# maxHeightPixels 200:100:20
# bigDataUrl maps_loop.bb


track hicar_10kb
type bigInteract
visibility full
shortLabel Hi-CAR_10kb
longLabel Hi-CAR_10kb
#spectrum on
maxHeightPixels 200:100:20
bigDataUrl hicar_10k.bb


track hichip_CTCF
type bigInteract
visibility full
shortLabel hichip_CTCF
longLabel hichip_CTCF
#spectrum on
maxHeightPixels 200:100:20
bigDataUrl hichip_ctcf_10k.bb

track hiccups
type bigInteract
visibility full
shortLabel hiccups
longLabel hiccups
#spectrum on
maxHeightPixels 200:100:20
bigDataUrl hicupps_10k.bb

track hiccups_all_loops
type bigInteract
visibility full
shortLabel hiccups_all
longLabel hiccups_all
#spectrum on
maxHeightPixels 200:100:20
bigDataUrl hicups_10k_all_anchors.bb

track hichip_k4me3
type bigInteract
visibility full
shortLabel hichip_k4me3
longLabel hichip_k4me3
#spectrum on
maxHeightPixels 200:100:20
bigDataUrl h4me3_10k.bb


# track superTrack1
# compositeTrack on
# shortLabel  h1_feature_bingren
# longLabel h1_feature_bingren
# color 252,78,42
# type bigWig
# allButtonPair on
# visibility full
# darkerLabels on
# autoScale on
# alwaysZero on
# windowingFunction maximum

    # track tf_oct4
    # type bigWig
    # parent superTrack1
    # bigDataUrl h1_OCT4.bigWig
    # shortLabel Oct4
    # longLabel Oct4  
    # visibility full
    # autoScale on
    # alwaysZero On
    # maxHeightPixels 100:20:8


    track sox2
    type bigWig
    # parent superTrack1
    bigDataUrl H1_SOX2_4931_peaks.BigWig
    shortLabel SOX2
    longLabel SOX2  
    visibility full
    autoScale on
    color 0,0,153
    alwaysZero On
    maxHeightPixels 100:20:8
    windowingFunction maximum

    track NANOG-human
    type bigWig
    bigDataUrl https://www.encodeproject.org/files/ENCFF305LHR/@@download/ENCFF305LHR.bigWig
    shortLabel NANOG
    longLabel NANOG  
    visibility full
    autoScale on
    alwaysZero On
    color 0,153,153 
    maxHeightPixels 100:20:8
    windowingFunction maximum

    track CTCF
    type bigWig
    bigDataUrl https://www.encodeproject.org/files/ENCFF473IZV/@@download/ENCFF473IZV.bigWig
    shortLabel CTCF
    longLabel CTCF  
    visibility full
    autoScale on
    alwaysZero On
    color 51,51,204 
    maxHeightPixels 100:20:8
    windowingFunction maximum


    track H3K4me3-human
    type bigWig
    bigDataUrl https://www.encodeproject.org/files/ENCFF623ZAW/@@download/ENCFF623ZAW.bigWig
    shortLabel H3K4me3
    longLabel H3K4me3  
    visibility full
    autoScale on
    alwaysZero On
    color 255,102,204 
    maxHeightPixels 100:20:8
    windowingFunction maximum


    track H3K27ac-human
    type bigWig
    bigDataUrl https://www.encodeproject.org/files/ENCFF986PCY/@@download/ENCFF986PCY.bigWig
    shortLabel H3K27ac
    longLabel H3K27ac  
    visibility full
    autoScale on
    alwaysZero On
    color 255,153,51 
    maxHeightPixels 100:20:8
    windowingFunction maximum

    track ATAC
    type bigWig
    bigDataUrl 4dn_donw_sample_r2_treat_pileup.bw   
    shortLabel ATAC
    longLabel ATAC
    visibility full
    autoScale on
    alwaysZero On
    color 255,0,0 
    maxHeightPixels 100:20:8
    windowingFunction maximum