hub hicar_loop_5kb
shortLabel hicar_loop_5kb 
longLabel Example Hub for useOneFile option
useOneFile on
email yu.xiang@duke.edu

genome hg38

# track maps_loos
# type bigInteract
# visibility full
# shortLabel 50kloop
# longLabel hicarloop_50k
# spectrum on
# maxHeightPixels 200:100:20
# bigDataUrl maps_loop.bb


track hicar_10kb
type bigInteract
visibility full
shortLabel hicar_10kb
longLabel hicar_10kb_4base
#spectrum on
maxHeightPixels 200:100:20
bigDataUrl maps_loop_4base_10k.bb


track hicar_5kb
type bigInteract
visibility full
shortLabel hicar_5kb_4base
longLabel hicar_5kb_4base
#spectrum on
maxHeightPixels 200:100:20
bigDataUrl hicar_5kb.bed.sorted.bed.bb

track hichip_CTCF_10kb
type bigInteract
visibility full
shortLabel hichip_CTCF_10kb
longLabel hichip_CTCF_10kb
#spectrum on
maxHeightPixels 200:100:20
bigDataUrl hichip_ctcf.bb

track hiccups_5kb
type bigInteract
visibility full
shortLabel hiccups
longLabel hiccups_5k
#spectrum on
maxHeightPixels 200:100:20
bigDataUrl hicupps.bed.sorted.bed.bb

track hichip_k4me3_5kb
type bigInteract
visibility full
shortLabel hichip_k4me3_5kb
longLabel hichip_k4me3_5kb
#spectrum on
maxHeightPixels 200:100:20
bigDataUrl k4me3.bed.sorted.bed.bb


track hervh
type bigBed 3
bigDataUrl hg38_hervh.bb
shortLabel hervh
longLabel hervh 

track LTR7
type bigBed 3
bigDataUrl hg38_ltr7.bb
shortLabel LTR7
longLabel LTR7 


track superTrack1
compositeTrack on
shortLabel  h1_feature_bingren
longLabel h1_feature_bingren
color 252,78,42
type bigWig
allButtonPair on
visibility full
darkerLabels on
autoScale on
alwaysZero on
windowingFunction maximum

    track tf_oct4
    type bigWig
    parent superTrack1
    bigDataUrl h1_OCT4.bigWig
    shortLabel Oct4
    longLabel Oct4  
    visibility full
    autoScale on
    alwaysZero On
    maxHeightPixels 100:20:8


    track sox2
    type bigWig
    parent superTrack1
    bigDataUrl H1_SOX2_4931_peaks.BigWig
    shortLabel SOX2
    longLabel SOX2  
    visibility full
    autoScale on
    alwaysZero On
    maxHeightPixels 100:20:8

    track NANOG-human
    type bigWig
    parent superTrack1
    bigDataUrl https://www.encodeproject.org/files/ENCFF305LHR/@@download/ENCFF305LHR.bigWig
    shortLabel NANOG
    longLabel NANOG  
    visibility full
    autoScale on
    alwaysZero On
    maxHeightPixels 100:20:8

    track CTCF
    type bigWig
    parent superTrack1
    bigDataUrl https://www.encodeproject.org/files/ENCFF473IZV/@@download/ENCFF473IZV.bigWig
    shortLabel CTCF
    longLabel CTCF  
    visibility full
    autoScale on
    alwaysZero On
    maxHeightPixels 100:20:8

    # track MYC-human
    # type bigWig
    # parent superTrack1
    # bigDataUrl https://www.encodeproject.org/files/ENCFF878ZLF/@@download/ENCFF878ZLF.bigWig   
    # shortLabel MYC-human
    # longLabel MYC-human  
    # visibility hide
    # autoScale on
    # alwaysZero On
    # maxHeightPixels 100:20:8

    # track H3K4me1-human
    # type bigWig
    # parent superTrack1
    # bigDataUrl https://www.encodeproject.org/files/ENCFF593OAZ/@@download/ENCFF593OAZ.bigWig
    # shortLabel H3K4me1
    # longLabel H3K4me1  
    # visibility full
    # autoScale on
    # alwaysZero On
    # maxHeightPixels 100:20:8

    # track H3K4me2-human
    # type bigWig
    # parent superTrack1
    # bigDataUrl https://www.encodeproject.org/files/ENCFF502TJG/@@download/ENCFF502TJG.bigWig
    # shortLabel H3K4me2
    # longLabel H3K4me2 
    # visibility full
    # autoScale on
    # alwaysZero On
    # maxHeightPixels 100:20:8

    track H3K4me3-human
    type bigWig
    parent superTrack1
    bigDataUrl https://www.encodeproject.org/files/ENCFF623ZAW/@@download/ENCFF623ZAW.bigWig
    shortLabel H3K4me3
    longLabel H3K4me3  
    visibility full
    autoScale on
    alwaysZero On
    maxHeightPixels 100:20:8


    track H3K27ac-human
    type bigWig
    parent superTrack1
    bigDataUrl https://www.encodeproject.org/files/ENCFF986PCY/@@download/ENCFF986PCY.bigWig
    shortLabel H3K27ac
    longLabel H3K27ac  
    visibility full
    autoScale on
    alwaysZero On
    maxHeightPixels 100:20:8


    # track H3K27ac-human_bing_ren
    # type bigWig
    # parent superTrack1
    # bigDataUrl https://www.encodeproject.org/files/ENCFF986PCY/@@download/ENCFF986PCY.bigWig
    # shortLabel bing_ren_H3K27ac
    # longLabel bing_ren_H3K27ac  
    # visibility full
    # autoScale on
    # alwaysZero On
    # maxHeightPixels 100:20:8

    track H3K27me3-human
    type bigWig
    parent superTrack1
    bigDataUrl https://www.encodeproject.org/files/ENCFF502GXT/@@download/ENCFF502GXT.bigWig
    shortLabel H3K27me3
    longLabel H3K27me3  
    visibility full
    autoScale on
    alwaysZero On
    maxHeightPixels 100:20:8

    track H3K9me3-human
    type bigWig
    parent superTrack1
    bigDataUrl https://www.encodeproject.org/files/ENCFF300CCI/@@download/ENCFF300CCI.bigWig
    shortLabel H3K9me3
    longLabel H3K9me3  
    visibility full
    autoScale on
    alwaysZero On
    maxHeightPixels 100:20:8

    # track RNA
    # type bigWig
    # parent superTrack1
    # bigDataUrl bulk_RNA_encode_ENCFF571JOO_mapq10.bam.bw   
    # shortLabel RNA
    # longLabel RNA
    # visibility full
    # autoScale on
    # alwaysZero On
    # maxHeightPixels 100:20:8

    track ATAC
    type bigWig
    parent superTrack1
    bigDataUrl 4dn_donw_sample_r2_treat_pileup.bw   
    shortLabel ATAC
    longLabel ATAC
    visibility full
    autoScale on
    alwaysZero On
    maxHeightPixels 100:20:8

    # track TF_density
    # type bigWig
    # parent superTrack1
    # bigDataUrl TF_density.bw   
    # shortLabel TF_density
    # longLabel TF_density
    # visibility full
    # autoScale on
    # alwaysZero On
    # maxHeightPixels 100:20:8